Hosted Tools

 

Free Online BioInformatics Tools 

If you need a tool, ask me for it. I may add it to JustBio

DNA/RNA

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With this tool you can simply and quickly clean your sequences from unwanted text marks and spaces. This is useful after retrieving sequences from online databases for example.

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With this tool you can translateyour DNA sequences from 1 to 6 phases in formated outputs. Very clean.

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ORF Viewer
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With this simple tool, you can find quickly ORF regions on your DNA sequence. You get a graphical output on the 6 phases (direct and reverse orientations).

Batch Codon Usage



With this simple tool, you can find quickly ORF codon usage and %GC from one or more sequences.

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With this tool you can align easily your multiple sequences DNA or protein, based on a Clustalw engine.

Cutter



With this tool you can quicky get the list of all enzyme restriction sites on your sequence.

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With this tool you can quicky get the complementary (reversed or not) of your DNA sequence.

EnzFinder



With this tool you can search for commercial data about any Enzyme: availability, cut sequence, references, etc.

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With this tool you can simply and quickly calculate your primer parameters (Tm, %GC, ...)

Primer3



With this tool you can pick primers from a DNA sequence. This is a very complete tool which may be of complex usage...

PrimerAnneal
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With this tool you can search and visualize quickly where your primers will hybridize on your DNA template sequence. Uses degenerate code also and searchs in direct and reversed direction at once...

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Protein

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With this tool you can simply and quickly clean your sequences from unwanted text marks and spaces. This is useful after retrieving sequences from online databases for example.

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With this tool you can align easily your multiple sequences DNA or protein, based on a Clustalw engine.

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Search PROSITE patterns on your protein sequence

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Generate hydropathy & Antigenic plots (Kyte-Doolittle and Hopp-Woods)

SeqPainter



Color your amino-acids sequence according to their properties (default by hydrophobicity).

ProtCalc



With this tool you can simply and quickly determine statistical, theoretical MW, pI and extinction data from your protein sequence.





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Arrays

Several tools to batch process and analyse array genomic data. It can be used also for lists of values to treat.

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Transpose Axion MEA raw files (Maestro 12,48,96 wells) into a single file easy to analyze and compare data. Also includes the option to make a ratio between 2 parameters.




Database Search and Tools

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Search PROSITE patterns on your protein sequence.

PromoterDB



Search for a promoter sequence by keyword in our database (vertebrates and non-vertebrates).

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Search worms species from the Felix Lab database.

 

 

 

 

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